205_taxon_abbreviated_lineage_flag: For human (taxon 9606), list every ancestor taxon in its lineage and whether that taxon is shown in UniProt's abbreviated lineage view (up:partOfLineage), as opposed to the full, non-abbreviated set of ancestors. Pairs with #183: since UniProt's taxonomy is pre-flattened, a single-hop rdfs:subClassOf already reaches every ancestor at any depth

206_alternative_name_kinds: Find proteins with a name of a specific, distinct naming convention beyond the ordinary recommended/alternative name pair: an allergen name (with the allergen nomenclature this comes from), a CD antigen name (HCDM nomenclature, e.g. for cell-surface markers), or an INN (international nonproprietary name, the standard name for a pharmaceutical substance such as a therapeutic antibody)

207_catalytic_activity_physiological_reaction: Find the physiological reaction (the direction/reaction an enzyme actually performs in vivo) associated with a catalytic activity annotation, using up:catalyzedPhysiologicalReaction, distinct from the general reaction the enzyme is capable of catalyzing (up:catalyzedReaction)

208_absorption_maximum_and_certainty: Find a protein's reported absorption maximum wavelength (up:maximum, in nm) together with up:certain, a qualifier flagging whether that reported value is certain or approximate

209_xenologous_interaction: Find protein-protein interactions flagged as xenologous (up:xeno), i.e. between molecules from different species, such as a host protein interacting with a pathogen protein — as opposed to an interaction between proteins of the same organism

210_mass_spectrometry_measured_value: Find a protein's mass spectrometry annotation with its measured mass (up:measuredValue) and, where recorded, the measurement's error margin (up:measuredError)

211_structure_resolution: Find the highest-resolution (lowest Angstrom value) experimentally determined structures cross-referenced from reviewed proteins, using up:resolution recorded on the PDB structure resource

212_enzyme_classification_replaced: Find EC (enzyme classification) numbers that have been replaced by a new EC number following reclassification, together with the new number's name. The old number itself no longer carries a name once replaced

213_protein_isolated_from_tissue: Find the tissue a protein was originally found to be expressed in from (up:isolatedFrom), distinct from its usual organism/subcellular-location annotations — the object is either a shared Tissue resource or a locally-defined (entry specific) tissue label

214_proteins_starting_with_methionine: Of reviewed human proteins, how many have a stored sequence starting with methionine (the universal translation start codon), and of those, how many have that initiator methionine later cleaved off post-translationally (up:Initiator_Methionine_Annotation with comment 'Removed') rather than retained in the mature protein

215_human_proteins_with_solved_structure: Count how many reviewed human proteins have at least one experimentally determined 3D structure cross-referenced from a PDB entry

216_human_proteins_by_existence_evidence: Break down reviewed human proteins by their protein-existence evidence level (up:existence): how many are 'very well characterized' with direct evidence at the protein level, as opposed to only evidence at the transcript level, inferred from homology, predicted, or uncertain

217_proteins_in_a_cancer_pathway: Find reviewed human proteins that are part of a cancer-related Reactome pathway (matched by the pathway's own name), using the pathway cross-reference's rdfs:comment as the pathway's human-readable name

218_protein_amino_acid_composition: Count how many times each of the 20 standard amino acids occurs in human TP53's (P04637) canonical sequence, using STRLEN(sequence) minus STRLEN(sequence with that residue letter removed) as an amino-acid-counting trick rather than a per-position scan. Note: for performance over a larger set rewrite this as a huge union.

219_human_gene_count_vs_isoform_count: Compare the number of reviewed human UniProtKB entries (one canonical accession per gene) to the number of distinct sequence resources those entries carry (the canonical sequence plus every annotated splice isoform), showing directly why searching human in UniProt returns far more sequences than there are protein-coding genes — the full picture also includes unreviewed (TrEMBL) entries on top of this. This is also due to there being more than one 'genome' source (proteome).

221_ddbj_to_uniparc: Using a "genome" identifier in INSDC use the DDBJ sparql endpoint to find the CDS identifiers and link these to UniParc records

62_diseases_involving_enzymes: Find diseases that are thought to be related to enzymes

63_diseases_involving_enzymes_located_in_mitochondrion: Find (Human genetic) diseases that are thought to be related to Enzymes, known to be located in the Mitochondrion

64_diseases_related_to_mutation_in_active_site: Find (Human Genetic) diseases, that are related to a natural variant on the active site of an enzyme.

65_distinct_extinct_organisms_in_uniprotkb: How many distinct extinct organisms are represented in UniProtKB

66_distinct_rhea_transport_in_reviewed_uniprot: Count number of unique Rhea transport reactions annotated in reviewed UniProtKB entries.

67_draft_human_metabolome: Generate a draft human metabolome

70_enzymes_interacting_with_molecules_similar_to_dopamine: Look for enzymes catalyzing reactions with molecules similar to dopamine.

71_enzymes_interacting_with_molecules_similar_to_dopamine_with_variants_related_to_disease: Look for enzymes catalyzing reactions with molecules similar to dopamine, with natural variants related to a disease.

72_enzymes_mapping_to_PDB: Select a mapping of UniProtKB enzymes to PDB entries using the UniProtKB cross-references to the PDB database.

73_enzymes_related_to_protein: Select Enzyme Classification (EC) classes that have a protein associated to them