http://sparql.uniprot.org/uniprot

Named graph http://sparql.uniprot.org/uniprot

Unique triples	52980166417
Distinct predicates	121
Distinct objects	963350872
Distinct classes	119
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Overview diagram

Main concepts

Diagram showing how concepts are related in the graph uniprot

Cross-references (links to external databases)

Classes used in this graph

There are 119 in use in this graph, all listed below. The table below lists the class, then in a hierarchical view the predicates in use, and then the classes of the linked instances or a datatype.

type
datatype
predicate
individual

faldo:ExactPosition
- faldo:position
  - xsd:int
- faldo:reference
faldo:InRangePosition
- faldo:begin
  - faldo:ExactPosition
  - faldo:Position
- faldo:end
  - faldo:ExactPosition
  - faldo:Position
- faldo:reference
  - up:External_Sequence
  - up:Simple_Sequence
faldo:OneOfPosition
- faldo:possiblePosition
  - faldo:ExactPosition
  - faldo:Position
- faldo:reference
  - up:External_Sequence
  - up:Simple_Sequence
faldo:Position
- faldo:begin
  - faldo:ExactPosition
  - faldo:Position
- faldo:end
  - faldo:ExactPosition
  - faldo:Position
- faldo:position
  - xsd:int
- faldo:possiblePosition
  - faldo:ExactPosition
  - faldo:Position
- faldo:reference
faldo:Region
- faldo:begin
- faldo:end
up:Absorption_Annotation
- up:certain
  - xsd:boolean
- up:maximum
  - xsd:int
- rdfs:comment
  - xsd:string
up:Active_Site_Annotation
- up:range
  - faldo:Region
- rdfs:comment
  - xsd:string
up:Activity_Regulation_Annotation
- up:sequence
- rdfs:comment
  - xsd:string
up:Allergen_Annotation
- up:sequence
  - up:Chain_Annotation
- rdfs:comment
  - xsd:string
up:Alternative_Initiation_Annotation
- up:sequence
- rdfs:comment
  - xsd:string
up:Alternative_Promoter_Usage_Annotation
- up:sequence
- rdfs:comment
  - xsd:string
up:Alternative_Sequence_Annotation
- up:range
  - faldo:Region
- up:substitution
  - xsd:string
- rdfs:comment
  - xsd:string
up:Alternative_Splicing_Annotation
- up:sequence
- rdfs:comment
  - xsd:string
up:Annotation
- up:sequence
- rdfs:comment
  - xsd:string
up:Beta_Strand_Annotation
- up:range
  - faldo:Region
up:Binding_Site_Annotation
- up:ligand
  - IRI
- up:ligandPart
  - IRI
- up:range
  - faldo:Region
- up:sequence
  - up:Modified_Sequence
- rdfs:comment
  - xsd:string
up:Biotechnology_Annotation
- up:sequence
  - up:Chain_Annotation
  - up:Modified_Sequence
- rdfs:comment
  - xsd:string
up:Book_Citation
- dcterms:identifier
  - xsd:string
- up:author
  - xsd:string
- up:date
  - xsd:date
- up:editor
  - xsd:string
- up:group
  - xsd:string
- up:name
  - xsd:string
- up:pages
  - xsd:string
- up:place
  - xsd:string
- up:publisher
  - xsd:string
- up:title
  - xsd:string
- up:volume
  - xsd:string
up:Catalytic_Activity
- up:catalyzedReaction
  - IRI
- up:enzymeClass
  - IRI
- skos:closeMatch
  - IRI
up:Catalytic_Activity_Annotation
- up:catalyticActivity
  - up:Catalytic_Activity
- up:catalyzedPhysiologicalReaction
  - IRI
- up:sequence
up:Caution_Annotation
- up:sequence
- rdfs:comment
  - xsd:string
up:Chain_Annotation
- up:mass
  - xsd:int
- up:range
  - faldo:Region
- rdfs:comment
  - xsd:string
up:Citation_Statement
- up:attribution
  - IRI
- up:context
- up:scope
  - xsd:string
- rdf:object
- rdf:predicate
  - IRI
- rdf:subject
  - up:Protein
up:Cofactor_Annotation
- up:cofactor
  - IRI
- up:sequence
- rdfs:comment
  - xsd:string
up:Coiled_Coil_Annotation
- up:range
  - faldo:Region
- up:sequence
  - up:Modified_Sequence
up:Compositional_Bias_Annotation
- up:range
  - faldo:Region
- rdfs:comment
  - xsd:string
up:Cross-link_Annotation
- up:range
  - faldo:Region
- up:sequence
  - up:Modified_Sequence
- rdfs:comment
  - xsd:string
up:Developmental_Stage_Annotation
- up:sequence
- rdfs:comment
  - xsd:string
up:Disease_Annotation
- up:disease
  - IRI
- up:sequence
  - up:Chain_Annotation
  - up:Modified_Sequence
- rdfs:comment
  - xsd:string
up:Disruption_Phenotype_Annotation
- up:sequence
- rdfs:comment
  - xsd:string
up:Disulfide_Bond_Annotation
- up:range
  - faldo:Region
- up:sequence
  - up:Modified_Sequence
- rdfs:comment
  - xsd:string
up:Domain_Annotation
- up:sequence
- rdfs:comment
  - xsd:string
up:Domain_Extent_Annotation
- up:range
  - faldo:Region
- rdfs:comment
  - xsd:string
up:Electronic_Citation
- dcterms:identifier
  - xsd:string
- up:author
  - xsd:string
- up:date
  - xsd:date
- up:locator
  - xsd:string
- up:name
  - xsd:string
- up:title
  - xsd:string
- skos:exactMatch
  - IRI
up:Erroneous_Gene_Model_Prediction_Annotation
- up:conflictingSequence
  - up:External_Sequence
- up:sequence
  - up:Modified_Sequence
- rdfs:comment
  - xsd:string
up:Erroneous_Initiation_Annotation
- up:conflictingSequence
  - up:External_Sequence
- up:sequence
  - up:Modified_Sequence
  - up:Simple_Sequence
- rdfs:comment
  - xsd:string
up:Erroneous_Termination_Annotation
- up:conflictingSequence
  - up:External_Sequence
- up:sequence
  - up:Modified_Sequence
- rdfs:comment
  - xsd:string
up:Erroneous_Translation_Annotation
- up:conflictingSequence
  - up:External_Sequence
- rdfs:comment
  - xsd:string
up:External_Sequence
- up:basedOn
  - up:External_Sequence
  - up:Simple_Sequence
- up:citation
- up:fragment
  - xsd:string
- up:mass
  - xsd:int
- up:md5Checksum
  - xsd:string
- up:modification
  - up:Alternative_Sequence_Annotation
- up:modified
  - xsd:date
- up:name
  - xsd:string
- up:precursor
  - xsd:boolean
- up:replaces
  - IRI
- up:translatedFrom
  - up:Nucleotide_Resource
- up:version
  - xsd:int
- rdf:value
  - xsd:string
- rdfs:comment
  - xsd:string
up:Frameshift_Annotation
- up:conflictingSequence
  - up:External_Sequence
- up:sequence
  - up:Modified_Sequence
  - up:Simple_Sequence
- rdfs:comment
  - xsd:string
up:Function_Annotation
- up:sequence
- rdfs:comment
  - xsd:string
up:Gene
- up:locusName
  - xsd:string
- up:orfName
  - xsd:string
- skos:altLabel
  - xsd:string
- skos:prefLabel
  - xsd:string
up:Glycosylation_Annotation
- up:range
  - faldo:Region
- up:sequence
  - up:Modified_Sequence
- rdfs:comment
  - xsd:string
up:Helix_Annotation
- up:range
  - faldo:Region
up:Induction_Annotation
- up:sequence
- rdfs:comment
  - xsd:string
up:Initiator_Methionine_Annotation
- up:range
  - faldo:Region
- up:sequence
  - up:External_Sequence
  - up:Modified_Sequence
- rdfs:comment
  - xsd:string
up:Interaction
- up:experiments
  - xsd:int
- up:participant
  - up:Participant
- up:xeno
  - xsd:boolean
up:Intramembrane_Annotation
- up:range
  - faldo:Region
- up:sequence
  - up:Modified_Sequence
- rdfs:comment
  - xsd:string
up:Kinetics_Annotation
- up:measuredActivity
  - xsd:string
- up:measuredAffinity
  - xsd:string
- up:sequence
- rdfs:comment
  - xsd:string
up:Lipidation_Annotation
- up:range
  - faldo:Region
- up:sequence
  - up:Modified_Sequence
- rdfs:comment
  - xsd:string
up:Mass_Spectrometry_Annotation
- up:measuredError
  - xsd:float
- up:measuredValue
  - xsd:float
- up:method
  - up:API, up:ESI, up:FAB, up:LSIMS, up:MALDI, up:PD, up:SELDI
- up:sequence
- rdfs:comment
  - xsd:string
up:Modified_Residue_Annotation
- up:range
  - faldo:Region
- up:sequence
  - up:External_Sequence
  - up:Modified_Sequence
- rdfs:comment
  - xsd:string
up:Modified_Sequence
- up:basedOn
  - up:External_Sequence
  - up:Simple_Sequence
- up:modification
  - up:Alternative_Sequence_Annotation
- up:name
  - xsd:string
- up:replaces
  - IRI
- rdf:value
  - xsd:string
up:Motif_Annotation
- up:range
  - faldo:Region
- up:sequence
  - up:Modified_Sequence
- rdfs:comment
  - xsd:string
up:Mutagenesis_Annotation
- up:range
  - faldo:Region
- up:sequence
  - up:Modified_Sequence
- up:substitution
  - xsd:string
- rdfs:comment
  - xsd:string
up:Natural_Variant_Annotation
- up:range
  - faldo:Region
- up:sequence
  - up:Modified_Sequence
- up:substitution
  - xsd:string
- rdfs:comment
  - xsd:string
- rdfs:seeAlso
  - IRI
- skos:related
  - IRI
up:Non-adjacent_Residues_Annotation
- up:range
  - faldo:Region
up:Non-standard_Residue_Annotation
- up:range
  - faldo:Region
- rdfs:comment
  - xsd:string
up:Non-terminal_Residue_Annotation
- up:range
  - faldo:Region
up:Non_Self_Interaction
- up:experiments
  - xsd:int
- up:participant
  - up:Participant
- up:xeno
  - xsd:boolean
up:Nucleotide_Binding_Annotation
- up:range
  - faldo:Region
- rdfs:comment
  - xsd:string
up:Nucleotide_Resource
- up:citation
- up:database
  - IRI
- up:locatedOn
- up:sequenceDiscrepancy
  - IRI
up:Observation_Citation
- up:author
  - xsd:string
- up:date
  - xsd:date
- up:group
  - xsd:string
- up:title
  - xsd:string
up:PH_Dependence_Annotation
- up:sequence
- rdfs:comment
  - xsd:string
up:PTM_Annotation
- up:sequence
- rdfs:comment
  - xsd:string
up:Part
- up:alternativeName
  - up:Structured_Name
- up:enzyme
  - IRI
- up:recommendedName
  - up:Structured_Name
up:Participant
- rdfs:label
  - xsd:string
- owl:sameAs
up:Patent_Citation
- up:author
  - xsd:string
- up:date
  - xsd:date
- up:title
  - xsd:string
- skos:exactMatch
  - IRI
up:Pathway_Annotation
- up:sequence
  - up:Modified_Sequence
  - up:Simple_Sequence
- rdfs:seeAlso
  - IRI
up:Peptide_Annotation
- up:mass
  - xsd:int
- up:range
  - faldo:Region
- rdfs:comment
  - xsd:string
up:Pharmaceutical_Annotation
- up:sequence
  - up:Peptide_Annotation
- rdfs:comment
  - xsd:string
up:Plasmid
- rdfs:label
  - xsd:string
up:Polymorphism_Annotation
- up:sequence
  - up:Chain_Annotation
  - up:Modified_Sequence
- rdfs:comment
  - xsd:string
up:Propeptide_Annotation
- up:range
  - faldo:Region
- rdfs:comment
  - xsd:string
up:Protein
- up:alternativeName
  - up:Structured_Name
- up:annotation
  - up:Absorption_Annotation
  - up:Active_Site_Annotation
  - up:Activity_Regulation_Annotation
  - up:Allergen_Annotation
  - up:Alternative_Initiation_Annotation
  - up:Alternative_Promoter_Usage_Annotation
  - up:Alternative_Sequence_Annotation
  - up:Alternative_Splicing_Annotation
  - up:Annotation
  - up:Beta_Strand_Annotation
  - up:Binding_Site_Annotation
  - up:Biotechnology_Annotation
  - up:Catalytic_Activity_Annotation
  - up:Caution_Annotation
  - up:Chain_Annotation
  - up:Cofactor_Annotation
  - up:Coiled_Coil_Annotation
  - up:Compositional_Bias_Annotation
  - up:Cross-link_Annotation
  - up:Developmental_Stage_Annotation
  - up:Disease_Annotation
  - up:Disruption_Phenotype_Annotation
  - up:Disulfide_Bond_Annotation
  - up:Domain_Annotation
  - up:Domain_Extent_Annotation
  - up:Erroneous_Gene_Model_Prediction_Annotation
  - up:Erroneous_Initiation_Annotation
  - up:Erroneous_Termination_Annotation
  - up:Erroneous_Translation_Annotation
  - up:Frameshift_Annotation
  - up:Function_Annotation
  - up:Glycosylation_Annotation
  - up:Helix_Annotation
  - up:Induction_Annotation
  - up:Initiator_Methionine_Annotation
  - up:Intramembrane_Annotation
  - up:Kinetics_Annotation
  - up:Lipidation_Annotation
  - up:Mass_Spectrometry_Annotation
  - up:Modified_Residue_Annotation
  - up:Motif_Annotation
  - up:Mutagenesis_Annotation
  - up:Natural_Variant_Annotation
  - up:Non-adjacent_Residues_Annotation
  - up:Non-standard_Residue_Annotation
  - up:Non-terminal_Residue_Annotation
  - up:Nucleotide_Binding_Annotation
  - up:PH_Dependence_Annotation
  - up:PTM_Annotation
  - up:Pathway_Annotation
  - up:Peptide_Annotation
  - up:Pharmaceutical_Annotation
  - up:Polymorphism_Annotation
  - up:Propeptide_Annotation
  - up:RNA_Editing_Annotation
  - up:Redox_Potential_Annotation
  - up:Region_Annotation
  - up:Repeat_Annotation
  - up:Ribosomal_Frameshifting
  - up:Sequence_Caution_Annotation
  - up:Sequence_Conflict_Annotation
  - up:Sequence_Uncertainty_Annotation
  - up:Signal_Peptide_Annotation
  - up:Similarity_Annotation
  - up:Site_Annotation
  - up:Subcellular_Location_Annotation
  - up:Subunit_Annotation
  - up:Temperature_Dependence_Annotation
  - up:Tissue_Specificity_Annotation
  - up:Topological_Domain_Annotation
  - up:Toxic_Dose_Annotation
  - up:Transit_Peptide_Annotation
  - up:Transmembrane_Annotation
  - up:Turn_Annotation
  - up:Zinc_Finger_Annotation
- up:attribution
  - IRI
- up:citation
  - up:Book_Citation
  - up:Electronic_Citation
  - up:Observation_Citation
  - up:Patent_Citation
  - up:Submission_Citation
  - up:Thesis_Citation
- up:classifiedWith
  - IRI
- up:complete
  - xsd:boolean
- up:component
  - up:Part
- up:conflictingSequence
  - up:External_Sequence
- up:created
  - xsd:date
- up:domain
  - up:Part
- up:encodedBy
  - up:Gene
- up:encodedIn
  - up:Plasmid
- up:enzyme
  - IRI
- up:existence
  - up:Evidence_at_Protein_Level_Existence, up:Evidence_at_Transcript_Level_Existence, up:Inferred_from_Homology_Existence, up:Predicted_Existence, up:Uncertain_Existence
- up:interaction
  - up:Interaction
  - up:Non_Self_Interaction
  - up:Self_Interaction
- up:isolatedFrom
  - up:Tissue
- up:mnemonic
  - xsd:string
- up:modified
  - xsd:date
- up:oldMnemonic
  - xsd:string
- up:organism
  - IRI
- up:potentialSequence
  - up:External_Sequence
  - up:Modified_Sequence
  - up:Simple_Sequence
- up:proteome
  - IRI
- up:recommendedName
  - up:Structured_Name
- up:replaces
  - IRI
- up:reviewed
  - xsd:boolean
- up:sequence
  - up:External_Sequence
  - up:Modified_Sequence
  - up:Simple_Sequence
  - up:Unknown_Sequence
- up:submittedName
  - up:Structured_Name
- up:version
  - xsd:int
- rdfs:seeAlso
  - up:Nucleotide_Resource
  - up:Resource
  - up:Structure_Resource
  - up:Transcript_Resource
up:RNA_Editing_Annotation
- faldo:location
  - faldo:ExactPosition
  - faldo:Position
- up:frameshift
  - xsd:boolean
- up:sequence
  - up:Modified_Sequence
- rdfs:comment
  - xsd:string
up:Redox_Potential_Annotation
- rdfs:comment
  - xsd:string
up:Region_Annotation
- up:range
  - faldo:Region
- up:sequence
  - up:Modified_Sequence
- rdfs:comment
  - xsd:string
up:Repeat_Annotation
- up:range
  - faldo:Region
- rdfs:comment
  - xsd:string
up:Resource
- up:database
  - IRI
- up:signatureSequenceMatch
  - IRI
- up:translatedFrom
  - IRI
- rdfs:comment
  - xsd:string
- rdfs:seeAlso
up:Ribosomal_Frameshifting
- up:sequence
- rdfs:comment
  - xsd:string
up:Self_Interaction
- up:experiments
  - xsd:int
- up:participant
  - up:Participant
- up:xeno
  - xsd:boolean
up:Sequence_Caution_Annotation
- up:conflictingSequence
  - up:External_Sequence
- up:sequence
  - up:Modified_Sequence
  - up:Simple_Sequence
- rdfs:comment
  - xsd:string
up:Sequence_Conflict_Annotation
- up:conflictingSequence
  - up:External_Sequence
- up:range
  - faldo:Region
- up:sequence
  - up:External_Sequence
  - up:Modified_Sequence
- up:substitution
  - xsd:string
up:Sequence_Uncertainty_Annotation
- up:range
  - faldo:Region
- rdfs:comment
  - xsd:string
up:Signal_Peptide_Annotation
- up:range
  - faldo:Region
- rdfs:comment
  - xsd:string
up:Similarity_Annotation
- up:sequence
  - up:Chain_Annotation
- rdfs:comment
  - xsd:string
up:Simple_Sequence
- up:fragment
  - xsd:string
- up:mass
  - xsd:int
- up:md5Checksum
  - xsd:string
- up:modified
  - xsd:date
- up:name
  - xsd:string
- up:precursor
  - xsd:boolean
- up:replaces
  - IRI
- up:version
  - xsd:int
- rdf:value
  - xsd:string
up:Site_Annotation
- up:range
  - faldo:Region
- up:sequence
  - up:Modified_Sequence
- rdfs:comment
  - xsd:string
up:Strain
- rdfs:label
  - xsd:string
up:Structure_Resource
- up:chainSequenceMapping
  - IRI
- up:database
  - IRI
- up:method
  - up:Electron_Microscopy, up:Fiber_Diffraction, up:Infrared_Spectroscopy, up:NMR_Spectroscopy, up:Neutron_Diffraction, up:X-Ray_Crystallography
- up:resolution
  - xsd:float
up:Structured_Name
- up:allergenName
  - xsd:string
- up:cdAntigenName
  - xsd:string
- up:ecName
  - xsd:string
- up:fullName
  - xsd:string
- up:internationalNonproprietaryName
  - xsd:string
- up:shortName
  - xsd:string
up:Subcellular_Location_Annotation
- up:locatedIn
  - IRI
- up:sequence
- rdfs:comment
  - xsd:string
up:Submission_Citation
- up:author
  - xsd:string
- up:date
  - xsd:date
- up:group
  - xsd:string
- up:submittedTo
  - xsd:string
- up:title
  - xsd:string
up:Subunit_Annotation
- up:sequence
- rdfs:comment
  - xsd:string
up:Temperature_Dependence_Annotation
- up:sequence
- rdfs:comment
  - xsd:string
up:Thesis_Citation
- up:author
  - xsd:string
- up:date
  - xsd:date
- up:institution
  - xsd:string
- up:place
  - xsd:string
- up:title
  - xsd:string
up:Tissue
- rdfs:label
  - xsd:string
up:Tissue_Specificity_Annotation
- up:sequence
- rdfs:comment
  - xsd:string
up:Topological_Domain_Annotation
- up:range
  - faldo:Region
- up:sequence
  - up:Modified_Sequence
- rdfs:comment
  - xsd:string
up:Toxic_Dose_Annotation
- up:sequence
  - up:Chain_Annotation
  - up:Peptide_Annotation
- rdfs:comment
  - xsd:string
up:Transcript_Resource
- up:database
  - IRI
- up:transcribedFrom
  - up:Transcript_Resource
- up:translatedTo
  - up:Transcript_Resource
- rdfs:comment
  - xsd:string
- rdfs:seeAlso
- owl:sameAs
  - up:Transcript_Resource
up:Transit_Peptide_Annotation
- up:range
  - faldo:Region
- up:sequence
  - up:Modified_Sequence
- rdfs:comment
  - xsd:string
up:Transmembrane_Annotation
- up:range
  - faldo:Region
- up:sequence
  - up:Modified_Sequence
- rdfs:comment
  - xsd:string
up:Transposon
- rdfs:label
  - xsd:string
up:Turn_Annotation
- up:range
  - faldo:Region
up:Unknown_Sequence
- up:name
  - xsd:string
up:Zinc_Finger_Annotation
- up:range
  - faldo:Region
- rdfs:comment
  - xsd:string
rdf:Statement
- up:attribution
  - IRI
- up:citation
- up:context
- up:scope
  - xsd:string
- rdf:object
- rdf:predicate
  - IRI
- rdf:subject
owl:Ontology
- owl:imports
  - IRI

Predicates used in this graph

faldo:begin
faldo:end
faldo:location
faldo:position
faldo:possiblePosition
faldo:reference
dcterms:creator
dcterms:identifier
up:allergenName
up:alternativeName
up:annotation
up:attribution
up:author
up:basedOn
up:catalyticActivity
up:catalyzedPhysiologicalReaction
up:catalyzedReaction
up:cdAntigenName
up:cellularComponent
up:certain
up:chain
up:chainSequenceMapping
up:citation
up:classifiedWith
up:cofactor
up:complete
up:component
up:conflictingSequence
up:context
up:created
up:database
up:date
up:disease
up:domain
up:ecName
up:editor
up:encodedBy
up:encodedIn
up:enzyme
up:enzymeClass
up:erratum
up:evidence
up:existence
up:experiments
up:fragment
up:frameshift
up:fullName
up:group
up:institution
up:interaction
up:internationalNonproprietaryName
up:isolatedFrom
up:ligand
up:ligandPart
up:locatedIn
up:locatedOn
up:locator
up:locusName
up:manual
up:mass
up:maximum
up:md5Checksum
up:measuredActivity
up:measuredAffinity
up:measuredError
up:measuredValue
up:method
up:mnemonic
up:modification
up:modified
up:name
up:oldMnemonic
up:orfName
up:organism
up:orientation
up:pages
up:partOf
up:participant
up:place
up:potentialSequence
up:precursor
up:proteome
up:publisher
up:range
up:recommendedName
up:replaces
up:resolution
up:reviewed
up:scope
up:sequence
up:sequenceDiscrepancy
up:shortName
up:signatureSequenceMatch
up:source
up:submittedName
up:submittedTo
up:substitution
up:title
up:topology
up:transcribedFrom
up:translatedFrom
up:translatedTo
up:version
up:volume
up:xeno
rdf:object
rdf:predicate
rdf:subject
rdf:type
rdf:value
rdfs:comment
rdfs:label
rdfs:seeAlso
rdfs:subClassOf
owl:imports
owl:sameAs
skos:altLabel
skos:closeMatch
skos:exactMatch
skos:prefLabel
skos:related